Carlos Borroto
Principal Engineer at GeneDx
Gaithersburg, Maryland, United States
Summary
🤩
Rockstar🎓
Top SchoolCarlos Borroto is a Principal Engineer with over 15 years of bioinformatics and software engineering experience, currently shaping infrastructure and delivery at GeneDx. He combines hands-on pipeline engineering (Cromwell/WDL, GATK), backend web services (Django, DRF, Flask), and cloud architecture to operationalize genomic workflows for clinical and research use. His background spans academia, biotech, and startups, where he led teams building sample-to-result pipelines, variant annotation services, and gene-curation knowledgebases. Trained with a Master in Bioinformatics from Johns Hopkins, he brings deep domain expertise in computational genomics and a practical focus on reproducible, production-grade analysis. Unusually for a principal engineer, he still codes core pipeline components and evaluates emerging cloud solutions personally, bridging research needs with scalable clinical operations.
15 years of coding experience
10 years of employment as a software developer
Johns Hopkins UniversityBachelor in Science Biology, Bachelor in Science Biology at Universidad de la Habana
English, Spanish
Github Skills (101)
ruby10
semantic-similarity10
sequencing10
homebrew10
bioinformatics10
django9
package-management9
genomics9
conda9
dockerhub9
bioconda8
science8
api8
pipeline8
rest8
Programming languages (11)
Github contributions (5)
GenePeeks/biorest
Aug 2015 - Nov 2017
Contributions:2 releases, 10 PRs, 21 pushes in 2 years 3 months
apipythonrestclientsrest-python
GenePeeks/genepeeks-docker-library
Jul 2017 - Feb 2018
Contributions:5 PRs, 29 pushes, 5 branches in 7 months
dockerfilecompilationdockerdefinitionsexternal-tools
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