Charlie Seto
Curator
Metropolitan Fresno United States
Summary
👤
Senior🎓
Top SchoolCharlie Seto is a computational biologist and curator with a decade of experience translating microbial ecology and bioinformatics research into robust data stewardship at NCBI's Sequence Read Archive. With a PhD in Biomathematics/Bioinformatics and postdoctoral work on pediatric microbiomes and AMR-associated community traits, he blends deep modeling expertise (flux balance analysis, community metabolic models) with practical pipelines for scalable data and visualization. At NCBI he pairs curation responsibilities with hands-on bioinformatics tooling to ensure persistent, analysis-ready NGS access, and has evaluated mechanistic and ML-based 16S risk-prediction methods. Based in Fresno, he brings an unusual combination of production data curation and research-driven method development, comfortable moving between wet-lab origins and high-performance computational workflows.
11 years of coding experience
12 years of employment as a software developer
Doctor of Philosophy - PhD, Biomathematics, Bioinformatics, and Computational Biology, Doctor of Philosophy - PhD, Biomathematics, Bioinformatics, and Computational Biology at University of MinnesotaCal Poly Pomona
Github Skills (37)
metadata7
genome-assembly7
genomics6
metagenomics6
bioinformatics6
genome6
bioconductor5
assembler5
microbiome5
scaffold4
taxonomy4
genomes4
sequencing4
data-structures4
science3
Programming languages (7)
Github contributions (5)
ctseto/ModelSEEDDatabase
Oct 2015 - Mar 2017
Contributions:2 PRs, 5 pushes, 2 branches in 1 year 5 months
approachmodelseedmetadatabiochemistry
ctseto/PTSEM
Mar 2016 - Jun 2016
Contributions:7 pushes, 1 branch in 3 months
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