Dev Paudel
Technical Staff, Computational Biology
San Francisco Bay Area United States
Summary
👤
Senior🎓
Top SchoolDev Paudel is a bioinformatics scientist with a decade of experience translating genomics data into actionable insights across academia and industry. He designs and automates NGS pipelines, develops novel algorithms, and leads long-read sequencing analyses (Oxford Nanopore, PacBio) for projects ranging from plant genomes to CRISPR on-target characterization. With a PhD in Plant Breeding and a strong wet-lab background, he bridges molecular biology and computational genomics to deliver reproducible workflows and clear visualizations for cross-functional teams. He's published and presented extensively, and brings a practical mindset honed by building the first genetic map of elephant grass and optimizing multi-omic analyses in diverse organisms.
11 years of coding experience
9 years of employment as a software developer
Master of Science (MS), Agronomy and Crop Science, Master of Science (MS), Agronomy and Crop Science at Texas Tech UniversityB. Sc. Ag., Agriculture, B. Sc. Ag., Agriculture at Nepal jobsDoctor of Philosophy (PhD), Plant Breeding, Doctor of Philosophy (PhD), Plant Breeding at University of Florida
Github Skills (18)
genomics8
stable7
data-management6
data-wrangling5
shell5
assembler5
geospatial5
command-line3
genome-assembly3
jekyll3
genomes2
pytorch2
libtorch2
nvidia-docker1
scaffolding1
Programming languages (7)
Github contributions (5)
dpaudel/ASReml
Jun 2019 - Aug 2020
Contributions:20 commits, 20 pushes, 1 branch in 1 year 2 months
dpaudel/LearnR
Oct 2015 - Sep 2023
Contributions:182 pushes, 1 branch in 8 years 1 month
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