Emmanouil Maragkakis
Stadtman Principal Investigator & Chief Of Computational Genomics Unit
Baltimore, Maryland, United States
Summary
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Senior🎓
Top SchoolEmmanouil Maragkakis is a Stadtman Principal Investigator and Chief of the Computational Genomics Unit at the NIH with 15 years of experience applying data-driven and systems biology to genomics, RNA biology and aging. Trained across physics, biology and bioinformatics (PhD), he bridges rigorous quantitative modeling and practical bioinformatics to decipher how genome dysregulation drives disease and to uncover precision-medicine strategies. He leads research that integrates machine learning with large-scale genomic and transcriptomic data, moving insights from algorithm to biological interpretation. A polyglot coder comfortable in Perl, Go, R and Python, he combines hands-on tool development with team leadership in a translational research environment. Based in Baltimore, his interdisciplinary background enables novel approaches at the interface of biology and informatics that few computational genomicists pursue.
15 years of coding experience
3 years of employment as a software developer
Doctor of Philosophy (PhD), Bioinformatics, Doctor of Philosophy (PhD), Bioinformatics at The Martin Luther University of Halle-WittenbergPhysics, Physics at National and Kapodistrian University of Athens
Github Skills (41)
bam10
seq10
sam10
sequencing10
bioinformatics10
perl9
query-language9
sql-like9
rna-seq9
genomics8
go8
argument-parsing8
clip8
sql8
datasets8
Programming languages (9)
Github contributions (5)
maragkakislab/samql
Aug 2018 - Dec 2021
SQL-like query language for the SAM/BAM file format
Contributions:7 releases, 44 commits, 11 PRs in 3 years 4 months
query-languagesql-likebioinformaticsbamsam
mnsmar/nvimrc
Dec 2017 - Feb 2023
Contributions:12 pushes, 1 branch in 5 years 3 months
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