Gibraan Rahman
Bioinformatics Software Engineer II
San Diego, California, United States
Summary
👤
Senior🎓
Top SchoolGibraan Rahman is a Bioinformatics Software Engineer II with a PhD in Bioinformatics and nine years of experience building reproducible, production-ready tools for genomics and high-dimensional NGS analysis. At Chan Zuckerberg Biohub Network he combines strong software engineering practices (Git, CI/CD, Docker/Singularity) with expertise in Python and R to deliver pipelines and analytics used by cross-functional research teams. He also brings systems-level performance and safety skills from Rust and Go work, and uses Nextflow/Snakemake to make bioinformatics workflows portable and composable across HPC and cloud environments. Comfortable on *nix systems and fluent in SQL, he bridges statistical rigor (Bayesian methods) and pragmatic engineering to accelerate translational research. A NeoVim aficionado and active open-source maintainer, he favors clean, reproducible tooling that scales from notebooks to clusters.
10 years of coding experience
2 years of employment as a software developer
University of California, San DiegoBachelor's Degree, Biomedical Engineering, Bachelor's Degree, Biomedical Engineering at The University of Texas at Austin
English
Github Skills (82)
projection10
snakemake10
python10
topological-data-analysis10
microbiome10
regression10
gtk10
approximation10
biplot10
qt10
dimensionality-reduction10
sampling10
data-visualization10
stan10
phylogeny10
Programming languages (8)
Github contributions (5)
gibsramen/qupid
Jan 2022 - Sep 2022
Case-control matching for microbiome data
Contributions:2 releases, 4 reviews, 155 commits in 7 months
case-controlpythonmatchingbioinformaticsmicrobiome-data
gibsramen/xkcd-shuffle
Dec 2020 - Jan 2021
Contributions:24 commits, 7 pushes, 2 branches in 20 days
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