I-hsuan Lin
Bioinformatician
United Kingdom
Summary
👤
Senior🎓
Top SchoolI-hsuan Lin is a bioinformatician with 11 years’ experience applying NGS, epigenomic and comparative genomics approaches to translational oncology and microbiome research. Trained in the UK (BSc, MSc with distinction) and with a PhD in Bioinformatics from National Yang-Ming University, she has transitioned from prokaryotic genome annotation and replication-origin prediction tools to mammalian cancer genomics and epigenomic profiling. Her work spans practical pipeline development, server administration and large-scale analyses of TCGA/GEO/ArrayExpress datasets, bringing both computational rigor and wet-lab context to clinical projects. Now based at the University of Manchester Bioinformatics Core Facility, she integrates bacterial genomics insights into microbiome studies—a cross-domain perspective that strengthens host–microbe interpretation.
11 years of coding experience
8 years of employment as a software developer
Doctor of Philosophy (Ph.D.), Bioinformatics, Doctor of Philosophy (Ph.D.), Bioinformatics at National Yang Ming UniversityMaster of Science (M.Sc.), Bioinformatics, Graduation with Distinction, Master of Science (M.Sc.), Bioinformatics, Graduation with Distinction at University of Leicester
English, Chinese
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (128)
spatial-transcriptomics10
microbiome10
bioconductor10
phyloseq10
violin-plot10
single-cell-analysis10
genome10
sequencing10
single-cell-genomics10
spatially-resolved-transcriptomics10
bioinformatics10
illumina10
cran10
r9
bedtools9
Programming languages (15)
Github contributions (5)
ycl6/StackedVlnPlot
Oct 2020 - Mar 2022
Create stacked violin plot
Contributions:35 commits, 31 pushes, 2 branches in 1 year 5 months
violin-plotvlnplotggplot2
ycl6/16S-Demo
Jul 2020 - Jul 2021
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2 and phyloseq in R
Contributions:27 commits, 2 PRs, 21 pushes in 1 year
phyloseqrsequencing
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