Jarno Alanko
Postdoctoral Researcher at IT-palvelu Alanko
Finland
Summary
👤
Senior🎓
Top SchoolJarno Alanko is a postdoctoral researcher specializing in data structures and algorithms for bioinformatics with over a decade of experience bridging academia and applied IT. He earned a PhD in computer science from the University of Helsinki and has developed algorithms for genome-scale and metagenomic analysis while teaching and supervising students. Beyond research, he runs a one-person IT consultancy maintaining commercial websites and publishes technical, hands-on projects—ranging from neural nets and DSP to cryptography and microcontrollers—in the Finnish magazine Skrolli, where he also serves as editor. His work combines rigorous theoretical foundations with practical engineering, and his public code and papers (GitHub and Google Scholar) reflect a habit of making complex tools and writeups accessible to broader audiences.
12 years of coding experience
7 years of employment as a software developer
Doctor of Philosophy - PhD, Computer Science, with distinction, Doctor of Philosophy - PhD, Computer Science, with distinction at University of HelsinkiMaster's degree, Computer Science, Master's degree, Computer Science at Aalto-yliopisto
English, Finnish
Github Skills (73)
indexing10
burrows-wheeler-transform9
bioinformatics9
graph9
mer8
conda8
package-management7
genome-assembly7
sequencing7
webfaction6
matrix6
bioconda6
assembler5
data-structure5
bit5
Programming languages (8)
Github contributions (5)
algbio/SBWT
May 2022 - Jan 2023
Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)
Contributions:1 release, 209 commits, 3 PRs in 7 months
burrows-wheeler-transformbwtindexingk-mers
jnalanko/sbwt-rs-cli
Apr 2024 - Jul 2026
Contributions:3 releases, 4 PRs, 285 pushes in 2 years 3 months
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.