Jianxu Chen
Dortmund, North Rhine-Westphalia, Germany
Summary
👤
Senior🎓
Top SchoolJianxu Chen is a research group leader with 11 years of experience building deep learning and computer vision solutions for biomedical and microscopy imaging, from 2D/3D medical image segmentation to cell detection, tracking and complex bio-network analysis. With a Ph.D. in Computer Science and a strong mathematical foundation, he blends numerical analysis and PDE expertise with practical skills in TensorFlow, Torch7, Matlab, C++ (ITK/OpenCV), Python and R. He has led interdisciplinary projects at institutions including the Allen Institute and Leibniz ISAS, translating biological questions into robust algorithms for real-world studies like thrombus fibrin network analysis and bacterial time-lapse tracking. Known for mentoring students and collaborating across applied math, statistics and biology, he brings both academic rigor and production-oriented engineering to biomedical imaging challenges. An oft-overlooked strength is his hands-on experience with both classical image analysis toolkits and modern deep learning frameworks, enabling hybrid solutions when pure end-to-end learning falls short.
11 years of coding experience
10 years of employment as a software developer
Bachelor's Degree, Applied Mathematics, 3.4, Bachelor's Degree, Applied Mathematics, 3.4 at University of Science and Technology of ChinaDoctor of Philosophy (Ph.D.), Computer Science and Engineering, Doctor of Philosophy (Ph.D.), Computer Science and Engineering at University of Notre DameHigh School, Mathematics, High School, Mathematics at Tianjin Experimental High School
Chinese, English
Github Skills (82)
medical-image-analysis10
segmentation10
data-augmentation10
ai9
jupyter-widget9
python9
image-viewer9
deep-learning9
visualization9
pytorch9
imaging9
medical-image-processing9
jupyterlab-extension9
image-segmentation9
image-analysis8
Programming languages (6)
Github contributions (5)
AllenInstitute/aics-segmentation
Oct 2018 - Dec 2020
AICS Segmentation (One-Way) Mirror
Contributions:71 commits, 5 pushes, 8 comments in 2 years 2 months
segmentation
MMV-Lab/mmv_im2im
Nov 2021 - Jan 2023
Python package for deep learning based image to image transformation
Contributions:8 reviews, 128 commits, 37 PRs in 1 year 2 months
deep-learningpython
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.