Johannes Wibisana
PHD Student at Okinawa Institute of Science and Technology
Okinawa Prefecture, Japan
Summary
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Senior🎓
Top SchoolJohannes Wibisana is a PhD student at OIST specializing in transcriptional regulation of the marine plankton Oikopleura dioica, with eight years' experience in NGS data analysis across transcriptomics, genomics, and functional genomics. He combines hands-on expertise in RNA-seq, CAGE, ATAC-seq, ChIP-seq and CUT&Run with genome assembly and annotation for both model and non-model organisms. His background includes single-cell and fluorescence imaging studies of NF-kB dynamics at RIKEN, giving him a rare interdisciplinary fluency between live-cell microscopy and large-scale sequencing. Comfortable with practical lab workflows (ELISA, RNA extraction) and basic web tooling (Jekyll/HTML, ImageJ), he bridges experimental design and computational analysis to turn complex biological questions into reproducible pipelines. Based in Okinawa, he brings a global training path from Osaka University to OIST and a knack for integrating diverse data types to probe regulatory systems in unconventional marine models.
8 years of coding experience
1 year of employment as a software developer
Master of Science - MS, Biology/Biological Sciences, General, Master of Science - MS, Biology/Biological Sciences, General at Osaka UniversityDoctor of Philosophy - PhD, Doctor of Philosophy - PhD at Okinawa Institute of Science and Technology Graduate University (OIST)
English, Indonesian, Japanese
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (72)
algolia10
nextflow10
github-pages10
jekyll10
jekyll-theme10
systems-biology9
network-analysis9
ode9
nf-core9
optimization9
computational-biology9
simulation9
dynamical-systems9
parameter-estimation9
modeling9
Programming languages (10)
Github contributions (5)
okadalabipr/Wibisana2021
Jan 2021 - Jun 2022
Imaging and single cell sequencing analyses of super-enhancer activation mediated by NF-κB in B cells (Wibisana, JN et al., 2021)
Contributions:46 commits, 2 PRs, 13 pushes in 1 year 4 months
imagingsequencing
johannesnicolaus/Awesome-CV
Oct 2020 - Jan 2025
:page_facing_up: Awesome CV is LaTeX template for your outstanding job application
Contributions:14 pushes, 1 branch in 4 years 4 months
templatelatex-templatejoblatexjob-application
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