Keiichiro Ono
Bioinformatics Software Engineer
San Diego, California, United States
Summary
👤
Senior🎓
Top SchoolKeiichiro Ono is a bioinformatics software engineer with 17+ years designing web-based data visualization and network-analysis tools, best known for long-standing contributions to Cytoscape and its deployment tooling. He blends deep academic experience in computational molecular biology with practical engineering—building performant, browser-native visualizations that scale to very large datasets and interactive graph analytics. Currently focused on integrating large language models into analytical workflows and extending Cytoscape Web APIs to support plugins and LLM agents at UC San Diego Health, he also consults pro bono with nonprofits and research groups to democratize data insights. His open-source work includes automating cross-platform build, release, and installer pipelines for the widely used Cytoscape platform, underscoring a knack for reliable DevOps at scale. Based in San Diego, he prioritizes projects with public-health and scientific impact, ensuring technical limits don’t block important research and advocacy.
17 years of coding experience
23 years of employment as a software developer
MS Computational Molecular Biology / Computer Science, MS Computational Molecular Biology / Computer Science at University of Southern CaliforniaUniversity of California, Irvine
Japanese, Chinese
Github Skills (10)
sh10
automation10
script10
automations10
shell10
scripting10
cicd10
maven9
git8
build-automation8
Programming languages (8)
Github contributions (5)
cytoscape/cytoscape
Jan 2013 - Nov 2017
Cytoscape: an open source platform for network analysis and visualization
Role in this project:
DevOps Engineer & Automation Engineer
DevOps Engineer & Automation EngineerContributions:1 release, 70 commits, 21 pushes in 4 years 10 months
Contributions summary:Keiichiro primarily focused on creating and updating scripts related to building, deploying, and releasing Cytoscape installers and application bundles. Their contributions included scripts for building installers for various platforms, deploying them to a server, and automating version updates. The user also added options and functionality to existing scripts, indicating a focus on improving the automation and deployment process.
cytoscapevisualization
cytoscape-ci/service-idmapping
Dec 2015 - Mar 2016
Contributions:24 commits, 22 pushes, 1 branch in 3 months
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