Matt Stone
Associate Director Of Engineering
West Windsor, New Jersey, United States
Summary
👤
Senior🎓
Top SchoolMatt Stone is an engineering leader and bioinformatics expert with 11 years of experience building tools, pipelines, and teams that enable others to deliver high-impact science and software. Currently Associate Director of Engineering at Fulcrum Genomics after roles from Principal to Staff Bioinformatics Scientist, he blends hands-on data science with engineering management to productionize genomics workflows. His background spans academic and clinical research environments (Massachusetts General Hospital, Fred Hutch, UW–Madison) and biotech data roles, giving him a strong bridge between rigorous research and reliable production systems. Known for building developer-friendly pipelines and operational tooling, he focuses on making complex bioinformatics accessible and dependable for downstream users. Based in West Windsor, NJ, he brings both technical depth in biomedical data science and a knack for scaling teams and processes as projects grow. An often-overlooked strength is his consistent progression from practitioner to leader within the same organization, signaling an ability to evolve technical strategy while staying grounded in day-to-day engineering.
12 years of coding experience
5 years of employment as a software developer
M.S. Biomedical Data Science, M.S. Biomedical Data Science at University of Wisconsin-MadisonB.A. Computer Science, B.A. Computer Science at Dartmouth College
Github Skills (141)
package-management10
python10
pysam10
genomics10
clustering10
bedtools10
htslib10
bcftools10
tabix10
conda10
bayesian10
sequencing10
samtools10
fastq10
bioinformatics10
Programming languages (15)
Github contributions (5)
msto/dataclass_io
Apr 2024 - Apr 2026
Read and write dataclasses.
Contributions:1 release, 2 reviews, 7 PRs in 2 years
dataclasses
msto/snakemake-condor-profile
Feb 2019 - Jun 2025
Contributions:6 pushes, 1 branch, 1 comment in 6 years 5 months
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