Roberto Alvarez
Senior Bioinformatics Scientist
Miami, Florida, United States
Summary
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Rockstar🎓
Top SchoolRoberto Alvarez is a Senior Bioinformatics Scientist with 11 years of experience building and optimizing NGS workflows, custom bioinformatics tools, and data visualization portals, currently driving analytical solutions at Catalytic Data Science from Miami. He blends strong software engineering (C++, Python, Java, SQL) with domain expertise in transcriptome annotation and pipeline consolidation, translating multi-language codebases into efficient C++ programs and web services. At NCBI he architected bespoke RNA-Seq annotation workflows and web-integrated visualizations for poorly annotated BioProjects, and he continues to improve reproducible software distribution as an automation/build engineer for the prominent bioconda-recipes channel. Trained in physics (University of Havana) with a PhD in Bioinformatics, he pairs rigorous quantitative thinking with practical system design, including hands-on work packaging widely used tools like IGVtools and SRA-tools for conda. Colleagues describe him as a pragmatic problem-solver who bridges research needs and production-grade software delivery.
11 years of coding experience
5 years of employment as a software developer
Doctor of Philosophy (Ph.D.), Bioinformatics, and Computational Biology, Doctor of Philosophy (Ph.D.), Bioinformatics, and Computational Biology at Pázmány Péter Catholic UniversityPhysics Degree, Physics Degree at University of Havana
Spanish, English, Italian
Stackoverflow
77reputation
3kreached
1answer
4questions
Github Skills (22)
package-management10
bash10
conda10
script10
bioinformatics10
gnu-make9
makefile9
dockers7
docker7
html6
jpa6
jaxb6
jsf6
many-to-many6
perl6
Programming languages (10)
Github contributions (5)
bioconda/bioconda-recipes
Jun 2019 - Nov 2022
Conda recipes for the bioconda channel.
Role in this project:
Automation Engineer / Build & Release Engineer
Automation Engineer / Build & Release EngineerContributions:16 reviews, 27 commits, 44 PRs in 3 years 5 months
Contributions summary:Roberto primarily contributes to automating the build and package management processes within the bioconda-recipes repository. They update existing recipes for various bioinformatics tools like IGVtools, SRA-tools, MACE, and Homer. The user modifies build scripts, integrates necessary dependencies, and resolves compilation and installation issues. Their work ensures these bioinformatics tools are correctly packaged and easily accessible through the conda environment.
biocondacondabioinformaticspackage-management
NLM-DIR/gtax
Nov 2021 - Jan 2026
GTax python package provides tools for the creation of the GTax sequence-based database. This database includes one assembly per organism deposited in the NCBI Genomes database.
Contributions:10 releases, 1 PR, 45 pushes in 4 years 3 months
databasencbipython
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