Stijn Van Dongen
Principal Data Operations Engineer
Cambridge, England, United Kingdom
Summary
👤
Senior🎓
Top SchoolStijn Van Dongen is a Principal Data Operations Engineer based in Cambridge with over eight years of experience building high-performance bioinformatics software and data infrastructure. He specializes in algorithm and workflow development for large-scale genomic data, leveraging C, R, Nextflow, and Linux batch systems to deliver robust, distributed pipelines. His work includes authoring widely used scientific tools—MCL, Sylamer and contributing to Kraken—demonstrating a rare blend of discrete mathematics, network analysis and practical engineering. Comfortable across low-level HPC and scripting ecosystems (Perl, Python, Bash), he also emphasizes clear communication through tutoring, documentation and cross-disciplinary collaboration. A PhD in Computational and Applied Mathematics informs his rigorous approach to algorithm design and statistical computing. Colleagues rely on him to tame messy, massive datasets and translate complex methods into repeatable production workflows.
8 years of coding experience
21 years of employment as a software developer
Master's degree Mathematics, Master's degree Mathematics at Eindhoven University of TechnologyDoctor of Philosophy - PhD Computational and Applied Mathematics, Doctor of Philosophy - PhD Computational and Applied Mathematics at Utrecht University
Github Skills (67)
dataflow10
slurm10
network-analysis10
seq10
pipeline-framework10
directories10
clustering10
reproducible-science10
next-generation-sequencing10
singularity10
nextflow10
pipeline10
rna-seq10
markov10
histogram10
Programming languages (14)
Github contributions (5)
micans/zoem
Nov 2021 - May 2025
A macro/programming language with stacks
Contributions:20 pushes, 1 tag, 10 comments in 3 years 6 months
macro-processormacro-programmingmicrolanguagestack-based
micans/cimfomfa
Apr 2021 - Sep 2022
Contributions:25 commits, 16 pushes, 1 branch in 1 year 6 months
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