Thibault Tubiana
Postdoctoral Fellow at CNRS - Centre national de la recherche scientifique
Gif-sur-Yvette, Ile-de-France
Summary
👤
Senior🎓
Top SchoolThibault Tubiana is a postdoctoral researcher with 11 years of experience specializing in structural bioinformatics, molecular modelling and molecular dynamics of viral proteins and their interactions with membranes. He has applied these skills across academic and industry settings—studying norovirus capsid assembly during his PhD, developing bioisosteric 3D fragment methods at Servier, and now working on CryoEM-integrated modelling of Hepatitis E ORF1 at CNRS/I2BC. Comfortable with end-to-end computational workflows, he routinely combines homology modelling, docking, GROMACS simulations and screening pipelines (SMINA/AutoDock/AutoDock-GPU), many of which are available on his GitHub. Colleagues value his ability to translate complex biophysical problems into reproducible simulation protocols and visualizations, and he often bridges computational work with experimental data such as SAXS and CryoEM. Notably, he has a track record of building tailored visualization tools for challenging biomolecules, reflecting a strong emphasis on clarity and reproducibility in structural modelling.
11 years of coding experience
Master 1, Bioinformatique, Master 1, Bioinformatique at Université Denis Diderot (Paris VII) / University Paris VIIDoctorat, Bioinformatics, Doctorat, Bioinformatics at Université Paris-Sud
English
Github Skills (74)
molecule10
pdb10
structural-biology10
blender10
folding10
protein-data-bank10
protein-structure10
proteins10
openlibrary9
pdb-files9
jupyter-widget9
bioinformatics9
autodock8
python8
drug-discovery8
Programming languages (8)
Github contributions (5)
tubiana/protocolGromacs
Aug 2020 - Oct 2022
Automatic gromacs protocol from preparation to production with ligand parametrization through
Contributions:1 release, 16 commits, 38 pushes in 2 years 2 months
tubiana/TTClust
Nov 2016 - Nov 2021
clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)
Contributions:22 releases, 1 review, 110 commits in 5 years
pdb
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