Thomas Boudier
Associate Professor
Nice, Provence-Alpes-Côte d'Azur, France
Summary
👤
Senior🎓
Top SchoolThomas Boudier is an associate professor and researcher with over 20 years of expertise in multi-dimensional biological image analysis, blending algorithmic depth with pragmatic software development in Java, R, and Python. He has transitioned from foundational research to leading applied projects in academic and biomedical settings, including roles at UPMC, Aix-Marseille, and international institutes such as Academia Sinica and the Walter and Eliza Hall Institute. As head of a project-based AI curriculum at Centrale Méditerranée, he partners with industry to translate complex imaging data problems into deployable solutions and trained practitioners. His work focuses on analyzing complexity in 3D/4D biological data, combining mathematical rigor from a PhD in computer science with hands-on bioimage analytics. Colleagues value him for managing interdisciplinary teams and for an uncommon mix of long-term academic research and production-grade software engineering. Based in Nice, he continues to bridge research and real-world impact by turning advanced image-processing methods into tools that address biomedical questions.
13 years of coding experience
24 years of employment as a software developer
Advanced Master Image Processing, Advanced Master Image Processing at Université Côte d'AzurMaster Mathematics, Master Mathematics at Université Paris CitéPhD Computer sciences applied to biology, PhD Computer sciences applied to biology at Pierre and Marie Curie University
Spanish, English, Chinese, French
Github Skills (34)
core-library10
imagej10
3d10
genome9
segmentation9
tango9
bioinformatics8
algorithm7
maven6
publish5
fiji5
maven-project5
image-processing4
leiningen4
gradle4
Programming languages (4)
Github contributions (5)
mcib3d/tapas-core
Aug 2019 - Jun 2022
Contributions:7 releases, 34 pushes, 1 branch in 2 years 10 months
mcib3d/mcib3d-plugins
Apr 2015 - Oct 2022
ImageJ plugins for 3D processing and analysis
Contributions:8 releases, 207 commits, 3 PRs in 7 years 7 months
3dimagej
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