Zhisong He
Lecturer at ETH Zürich
Basel, Basel-City, Switzerland
Summary
👤
Senior🎓
Top SchoolZhisong He is a computational biologist and lecturer with 11 years of experience bridging single-cell genomics research and computational method development at ETH Zurich’s QuaDBio/Treutlein lab. He focuses on cerebral organoid development and comparative primate brain evolution, applying multi-modal single-cell analysis to reveal developmental trajectories and molecular mechanisms. As a senior assistant he combines research, pipeline engineering, and teaching—contributing to master courses in Systems Genomics and Single-cell Technology while maintaining lab computational infrastructure. His trajectory spans top institutions (MPI, CAS-MPG, Skoltech) and reflects a knack for translating complex biological questions into reproducible computational workflows. Notably, he pairs deep domain expertise with practical lab-scale software stewardship, making advanced single-cell analyses accessible to collaborators.
11 years of coding experience
PhD, Computational Biology, PhD, Computational Biology at CAS-MPG Partner Institute for Computational BiologyBachelor, Bioinformatics, Bachelor, Bioinformatics at Zhejiang University
English, Chinese, Chinese, German
Github Skills (6)
single-cell-analysis10
sequencing9
bioinformatics9
rss6
css6
data-analysis4
Programming languages (2)
Github contributions (5)
quadbio/RNAseq_tutorial
Sep 2022 - Sep 2022
Contributions:20 commits, 7 pushes in 21 days
quadbio/simspec
Jun 2021 - Nov 2022
Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
Contributions:4 commits, 29 pushes, 20 comments in 1 year 4 months
cssrssbatch-correctionsingle-cell-analysis
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